2019 Wellcome Genome Campus Fungal Pathogen Genomics course
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Instructors:
- 08 May 2019
- Anatomy of homepages, Gene Pages, and Genome Browsers:
- SGD main page anatomy
- SGD gene pages
- CGD main page anatomy
- CGD gene pages
- SGD/CGD Genome Browser
- FungiDB main page navigation
- FungiDB Navigating gene record pages and genome browsers
- Anatomy of Ensembl Fungi
- Ensembl Fungi gene pages and genome browsers
- PomBase Anatomy of the main page
- PomBase Gene pages
- JGI MycoCosm
- Database Searches:
- FungiDB
- SGD YeastMine
- Ensembl Fungi BioMart
- Enriching your analysis with data from BioMart and FungiDB
- Galaxy RNA-Seq Part I:
- 09 May 2019
- Evolutionary Analysis and Orthology:
- SGD Predicting functional biology
- Ensembl Fungi Evolutionary analysis (gene trees)
- FungiDB Orthology and Phylogeny
- Transcriptomics and Proteomics:
- Ensembl Fungi Track Hubs
- SGD Expression tools - SPELL
- FungiDB Transcriptomics analysis
- FungiDB Proteomics analysis
- Galaxy RNA-Seq Part II:
- Galaxy Variant analysis Part I:
- 10 May 2019
- Comparative Genomics:
- Ensembl Fungi WGA
- JGI MycoCosm CAZy enzymes
- JGI MycoCosm Synteny
- FungiDB GBrowse synteny
- Ensembl Fungi protein domains and clusters across species
- Enrichment analysis:
- SNPs:
- Galaxy Variant analysis Part II:
Evelina Basenko (U of Liverpool), Omar Harb (U of Pennsylvania), David Roos (U of Pennsylvania), Nishadi De Silva (EMBL-EBI), Manuel Carbajo (EMBL-EBI), Sajeet Haridas (JGI), Erin Haskell (EMBL-EBI), Antonia Lock (PomBase), Kevin MacPherson (SGD/CGD), Dave Starns (U of Liverpool)
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Click here to download the course manual