2011 EuPathDB Workshop

2011 Schedule

with Exercises in English and Spanish

The course begins at 6:30 pm on Sunday, June 12th with a reception.
(If you arrive before the 4:00 pm hotel check-in time, you can call that day to see if your room is available for earlier check in. The Hotel can not guarantee your room will be ready before 4:00 pm. The number is 1-706-549-4433. There is a free hotel shuttle that can take you downtown for sightseeing while you wait.)

The course will finish at noon on Wednesday, June 15th.

Participants will be provided with desktop computers to use in the workshop sessions. You are welcome to bring your own laptop to use in other areas. The Holiday Inn Hotel provides free high-speed Internet in all rooms and lobby.

Quick Links: EuPathDB | AmoebaDB | CryptoDB | GiardiaDB | OrthoMCL DB | MicrosporidiaDB | PiroplasmaDB | PlasmoDB | ToxoDB | TrichDB | TriTrypDB


Date Time Place Event Instructor
June 12th, 2011 6:30 - 7:00 pm Holiday Inn
Georgian Ballroom
Registration & Welcome Reception.  
  7:00 - 7:30 pm Holiday Inn
Georgian Ballroom

General introduction to EuPathDB and omics.

David
  7:30 - 8:45 pm Holiday Inn
Georgian Ballroom
Workshop attendees and instructor introductions. Omar
Susanne
Brian
  8:45 - 9:00 pm Holiday Inn
Georgian Ballroom
Transportation information.
Susanne
June 13th, 2011 7:30 am Holiday Inn
Redfearn Grill
Breakfast (Use breakfast coupons in welcome packet)  
  9:00 - 9:30 am Life Sciences C128

Introductory Survey

Survey Results

Eileen
Susanne
  9:30 - 10:30 am Life Sciences C128 Introduction to EuPathDB sites and the search strategy system. Omar
  10:30 - 10:45 am Life Sciences B116 Morning Coffee Break  
  10:45 - 11:30 am Life Sciences C128 Mining EuPathDB: How to design an in silico experiment. David
  11:30 - 12:15 pm Life Sciences C128 Exercise I: Finding genes and exploring gene pages.

English

Spanish

Susanne
  12:15 - 1:15 pm Life Sciences B116 Lunch  
  1:15 - 1:45 pm Life Sciences C128 Exercise I: Finding genes and exploring gene pages (continued). Susanne
  1:45 - 2:45 pm Life Sciences C128 Exercise II: Using the genome browser.

English

Spanish

Omar
  2:45 - 3:00 pm Life Sciences B116 Afternoon Snack Break  
  3:00 - 4:00 pm Life Sciences C128

Short presentation: Polymorphisms, SNPs and Alleles

Exercise III: Population (SNPs) data.

English

Spanish

Brian
  4:00 - 5:00 pm Life Sciences C128 Exercise IV: Genomic co-location.

English

All
  5:00 - 6:30 pm   Free Time  
  6:30 - 8:30 pm Coverdel Center 340 Group Dinner Everyone
June 14th, 2011 7:30 am Holiday Inn
Redfearn Grill
Breakfast  
  9:00 - 10:00 am Life Sciences C128

Regular Expression Handout

Exercise V: Protein motifs and domains

English

Spanish

Omar
  10:00 - 10:30 am Life Sciences C128 Exercise VI: DNA motifs

English

Spanish

Brian
Susanne
Eileen
Cristina
  10:30 - 10:45 am Life Sciences B116 Morning Coffee Break  
  10:45 - 11:15 am Life Sciences C128 Exercise VI: DNA motifs (continued).  
  11:15 - 12:15 pm Life Sciences C128 Exercise VII: Isolate Data

English

Spanish

Omar
  12:15 - 1:15 pm Life Sciences B116 Lunch  
  1:15 - 2:15 pm Life Sciences C128

Orthology slides

Exercise VIII: Orthology and phylogenetic profiles

English

Spanish

Jessie
  2:15 - 2:45 pm Life Sciences C128 Exercise IX: Data retrieval and download

English

Spanish

Omar
Susanne
  2:45 - 3:00 pm Life Sciences B116 Afternoon Snack Break  
  3:00 - 4:30 pm Life Sciences C128

Short presentation: Proteomics Data at EuPathDB

Exercise X: Exploring proteomics data

English

Spanish

Mark
  4:30 - 5:00 pm Life Sciences C128 Question/Answer session  
June 15th, 2011 7:30 am Holiday Inn Breakfast  
  9:00 - 10:30 am Life Sciences C128 Exercise XI: Exploring transcriptomic data; part 1

English

Spanish

Brian
Omar
  10:30 - 10:45 Life Sciences B116 Morning Coffee Break  
  10:45 - 12:15 pm Life Sciences C128 Exercise XI: Exploring transcriptomic data; part 2 Omar
Brian
  12:15 - 1:15 pm Life Sciences B116 Lunch  
  1:15 - 2:45 pm Life Sciences C128 Exercise XII: Complex Strategy using genomic co-location.

English

Spanish

Omar
  2:45 - 3:00 pm Life Sciences B116 Afternoon Snack Break.  
  3:00 - 4:00 pm Life Sciences C128 Exercise XIII: Complex strategy: finding vaccines and drug targets

English

Omar
Brian
  4:00 - 4:30 pm Life Sciences C128 Outreach Omar
Susanne
  4:30 - 5:00 pm Life Sciences C128

Exit survey and general discussion.

Omar