EuPathDB Workshop

Schedule

Tentative schedule, subject to change.
The course begins at 6:30pm on Sunday, June 7th with a reception.
(If you arrive before the 4:00pm hotel check-in time, you can call that day to see if your room is available for earlier check in. The Hotel can not guarantee your room will be ready before 4:00pm. The number is 1-706-549-4433. There is a free hotel shuttle that can take you downtown for sightseeing while you wait.)

Group Dinner Monday, June 8, 6:30-8:30pm.

The course will finish at noon on Wednesday, June 10th.

Participants will be provided with desktop computers to use in the workshop sessions. You are welcome to bring your own laptop to use in other areas. The Holiday Inn Hotel provides free high-speed Internet in all rooms and lobby.

Quick Links - Beta Sites: EuPathDB | CryptoDB | GiardiaDB | OrthoMCL DB | PlasmoDB | ToxoDB | TrichDB | TriTrypDB


Date Time Place Event Instructor
June 7th, 2009 6:30pm - 7:00pm Holiday Inn Georgian Room Registration & Welcome Reception  
  7:00pm - 8:30pm Holiday Inn Georgian Room Introduction to Laboratory computers and course. Jessie Kissinger
June 8th, 2009 8:00am Holiday Inn Breakfast  
  9:00am - 10:00am Life Sciences C128 Introduction to EuPath organization, data sources, SOPs, tutorials, user comments.

Survey: familiarity with online terms.
Intro Survey Results
Jessie Kissinger
  10:00am - 10:15am Life Sciences B116 Coffee Break  
  10:15am - 11:00am Life Sciences C128 User Interface (UI) Exercises Eileen Kraemer, Brian Brunk
  11:00am - 12:00pm Life Sciences C128 Search Strategies and different data types David Roos
  12:00pm - 1:30pm Life Sciences B116 Lunch  
  1:30pm - 3:00pm Life Sciences C128 Sequence data, physical maps, scaffolds, contigs - Gbrowse, Synteny views

Sequence data, physical maps, scaffolds, contigs - Gbrowse, Synteny views
Brian Brunk
  3:00pm - 3:30pm Life Sciences B116 Coffee Break  
  3:30pm - 5:00pm Life Sciences C128 Presentation for Data Retrieval, Download (including Tables); SRT; Orthologs

Data Retrieval, Download (including Tables); SRT; Orthologs
Omar Harb
  5:00pm - 6:30pm Life Sciences C128 Free time  
  6:30pm - 8:30pm Coverdel Center, room 340 Group Dinner Everyone
June 9th, 2009 8:00am - 9:00am Holiday Inn Breakfast  
  9:00am - 10:00am Life Sciences C128 Similarity searches (BLAST, InterPro, motif) and Pathway tools

Presentation for Similarity searches (BLAST, InterPro, motif) and Pathway tools

Supplemental PDF for BLAST, motif queries and metabolic pathways
Omar Harb
  10:00am - 10:30am Life Sciences B116 Coffee Break  
  10:30am - 12:00pm Life Sciences C128 Presentation for Population Data, SNPs and alleles

Population Data, SNPs and alleles
Brian Brunk
  12:00pm - 1:30pm Life Sciences B116 Lunch  
  1:30pm - 3:00pm Life Sciences C128 Expression Data I (Microarray, SAGE, EST)
Solutions
John Brestelli
  3:00pm - 3:30pm Life Sciences B116 Coffee Break  
  3:30pm - 5:00pm Life Sciences C128 Presentation for Expression Data II (Proteomics)

Expression Data II (Proteomics)
Solutions
Mark Heiges
  6:00pm - 8:00pm Life Sciences C128 Optional staffed time in computer lab to work on participant questions and projects multiple
June 10th, 2009 8:00am Holiday Inn Breakfast  
  9:00am - 10:00am Life Sciences C128 Isolate Data Omar Harb, Jessica Kissinger
  10:00am - 10:30am Life Sciences B116 Coffee Break  
  10:30am - 11:00am Life Sciences C128 Community Outreach, additional training
EuPathDB Community Forum
Omar Harb
  11:00am - 12:00pm Life Sciences C128 Participant questions.  
  12:00pm Life Sciences B116 Workshop Adjourns.
Box lunches available.
 

Please note: You will need to check out of the hotel the morning of the day you are leaving. You have two options for your luggage and going back to the airport.

Option 1) Check out and leave your bag at the Holiday Inn and take airport shuttle from the Holiday Inn

Option 2) Check out, bring your bag to the workshop and leave on the airport shuttle from the Georgia Center (3 blocks from workshop). Please coordinate with Betsy Wang for assistance transporting your luggage.

The same shuttle bus stops at both locations. Remember to make a reservation on the shuttle for the day and time you plan to leave. You will be leaving from the Holiday Inn MAIN, or the UGA Georgia Center.