ApiDB/EuPathDB Workshop

Schedule

Tentative schedule, subject to change.
The course begins at 6:30pm on Sunday, June 8th with a reception.
(If you arrive before the 4:00pm hotel check-in time, you can call that day to see if your room is available for earlier check in. The Hotel can not guarantee your room will be ready before 4:00pm. The number is 1-706-549-4433. There is a free hotel shuttle that can take you downtown for sightseeing while you wait.)

Dinner June 10, 6-8pm.

The course will finish at noon on Wednesday, June 11th.

Participants will be provided with desktop computers to use in the workshop sessions. You are welcome to bring your own laptop to use in other areas. The Holiday Inn Hotel provides free high-speed Internet in all rooms and lobby. Much of downtown Athens has free wireless coverage.

Quick Links: ApiDB | CryptoDB | GiardiaDB | OrthoMCL DB | PlasmoDB | ToxoDB | TrichDB


Date Time Place Event Instructor
June 8th, 2008 6:30 - 7:15 PM Holiday Inn Event Room Registration, Mixer  
  7:15 - 8:00 PM Holiday Inn Event Room Introductions to the venue, instructors and participants, questionnaire
Intro Survey Results
Jessie Kissinger, Omar Harb
  8:00 - 8:45 PM Holiday Inn Event Room Introductory "Omics" Lecture
We request that this lecture be for pesonal use only.
Jessie Kissinger
June 9th, 2008 9:00 AM Life Sciences C128 Introduction to EuPath organization, data sources, SOPs, tutorials, user comments Jessie Kissinger
  10:00 - 10:15 AM Life Sciences B116 Coffee Break  
  10:15 AM Life Sciences C128 UI interface: Exercises
Solutions
Brian Brunk, Eileen Kraemer
  11:00 AM Life Sciences C128 Queries and History Gene pages and Different Data types Brian Brunk, David Roos
  12:30 - 1:30 PM Life Sciences B116 Lunch Eileen Kraemer
  1:30 PM Life Sciences C128 Sequence data; physical maps, scaffolds, contigs - Gbrowse, Synteny views
Sequence data; physical maps, scaffolds, contigs - Gbrowse, Synteny views: Exercises
Solutions
Steve Sullivan, David Roos
  3:00 - 3:30 PM Life Sciences B116 Coffee Break  
  3:30 - 5:30 PM Life Sciences C128 Data retrieval, SRT, download, Orthologs: Exercises
Solutions
Brian Brunk, David Roos
June 10th, 2008 8:00 - 9:00 AM Life Sciences C128 Lab open Kelly Storm
  9:00 AM Life Sciences C128 Blast and Pathway Tools
Blast and Pathway Tools: Exercises
Solutions
Omar Harb
  10:15 - 10:45 AM Life Sciences B116 Coffee  
  10:45 AM Life Sciences C128 Population data (isolates, SNPs): Exercises
Solutions
Brian Brunk
  12:30 - 1:30 PM Life Sciences B116 Lunch  
  1:30 PM Life Sciences C128 Expression data I (microarray, EST, SAGE): Exercises
Solutions
John Brestelli
  3:00 - 3:30 PM Life Sciences B116 Coffee  
  3:30 - 5:30 PM Life Sciences C128 Expression data II (proteomics): Exercises
Solutions
Mark Heiges
  6:00 - 8:00 PM Coverdell 340 Catered Dinner with CTEGD faculty All
June 11th, 2008 9:00 AM Life Sciences C128 ToxoDB (genes, alleles, new annotation) Brian Brunk
  10:00 - 10:30 AM Life Sciences B116 Coffee  
  10:30 AM Life Sciences C128 Work on participant Questions All
  11:45 AM Life Sciences C128 Exit Interview (10 min on computer)  
  Noon Life Sciences B116 Box lunches Jason's Deli All

Please note: You will need to check out of the hotel the morning of the day you are leaving. You have two options for your luggage and going back to the airport.

Option 1) Check out and leave your bag at the Holiday Inn and take airport shuttle from the Holiday Inn

Option 2) Check out, bring your bag to the workshop and leave on the airport shuttle from the Georgia Center (3 blocks from workshop)

The same shuttle bus stops at both locations. Remember to make a reservation on the shuttle for the day and time you plan to leave. Their number is 1-800-354-7874. You will be leaving from the Holiday Inn MAIN, or the UGA Georgia Center.

In Case of Emergency: Call Jessie Kissinger (Hm) 706-369-1708, (Cell) 706-254-1644

For Administrative Assistance contact Tonya Cox at 706-542-6632