EuPathDB Workshop
Schedule
(If you arrive before the 4:00 pm hotel check-in time, you can call that day to see if your room is available for earlier check in. The Hotel can not guarantee your room will be ready before 4:00 pm. The number is 1-706-549-4433. There is a free hotel shuttle that can take you downtown for sightseeing while you wait.)
The course will finish at noon on Wednesday, June 9th.
Participants will be provided with desktop computers to use in the workshop sessions. You are welcome to bring your own laptop to use in other areas. The Holiday Inn Hotel provides free high-speed Internet in all rooms and lobby.| Date | Time | Place | Event | Instructor |
|---|---|---|---|---|
| June 6th, 2010 | 6:30 pm - 7:00 pm | Holiday Inn Georgian Ballroom | Registration & Welcome Reception | |
| 7:00 pm - 8:30 pm | Holiday Inn Georgian Ballroom |
Introduction to Athens, UGA and Workshop. Lecture on data types Introduction to EuPathDB |
Jessie Kissinger | |
| June 7th, 2010 | 7:30 am | Holiday Inn | Breakfast | |
| 9:00 am - 9:15 am | Life Sciences C128 |
Introductory Survey | ||
| 9:15 am - 10:15 am | Life Sciences C128 |
Introduction to EuPathDB sites.
Introduction to EuPathDB Sites | Omar Harb Brian Brunk |
|
| 10:15 am - 10:30 am | Life Sciences B116 | Coffee Break | ||
| 10:30 am - 12:00 am | Life Sciences C128 |
Finding genes and Exploring gene pages General Strategies lecture Using the genome browser (Gbrowse) Gbrowse lecture |
Omar Harb | |
| 12:00 pm - 1:00 pm | Life Sciences B116 | Lunch | ||
| 1:00 pm - 2:00 pm | Life Sciences C128 |
Isolate Data Isolate Data lecture | Omar Harb | |
| 2:00 pm - 3:15 pm | Life Sciences C128 |
Populations data (SNPs) First SNPs lecture Second SNPs lecture |
Brian Brunk | |
| 3:15 pm - 3:30 pm | Life Sciences B116 | Coffee Break | ||
| 3:30 pm - 4:30 pm | Life Sciences C128 |
Motif and domain searches Motifs lecture | Omar Harb | |
| 4:30 pm - 5:00 pm | Life Sciences C128 |
Data retrieval and download Data retrieval and download lecture |
Brian Brunk | |
| 6:30 pm - 8:30 pm | Coverdel Center, room 340 | Group Dinner | Everyone | |
| June 8th, 2010 | 7:30 am | Holiday Inn | Breakfast | |
| 9:00 am - 10:15 am | Life Sciences C128 |
Exploring Transcriptomics data Transcriptomics lecture Transcriptomics lecture from camera |
Omar Harb Brian Brunk |
|
| 10:15 am - 10:30 am | Life Sciences B116 | Coffee Break | ||
| 10:30 am - 12:00 pm | Life Sciences C128 |
Exploring Transcriptomics data, continued |
Omar Harb Brian Brunk |
|
| 12:00 pm - 1:00 pm | Life Sciences B116 | Lunch | ||
| 1:00 pm - 2:30 pm | Life Sciences C128 |
Exploring Proteomics data Proteomics lecture Proteomics lecture from camera |
Mark Heiges | |
| 2:30 pm - 2:45 pm | Life Sciences B116 | Coffee Break | ||
| 2:45 pm - 5:00 pm | Life Sciences C128 |
Complex Searches Complex searches lecture |
Omar Harb Brian Brunk Jessie Kissinger |
|
| June 9th, 2010 | 7:30 am | Holiday Inn | Breakfast | |
| 9:00 am - 10:15 am | Life Sciences C128 |
Span Logic Span Logic lecture Span Logic lecture (cont.) |
Eileen Kraemer Brian Brunk |
|
| 10:15 am - 10:30 am | Life Sciences B116 | Coffee Break | ||
| 10:30 am - 11:00 am | Life Sciences C128 | Community Outreach | Omar Harb | |
| 11:00 am - 12:00 pm | Life Sciences C128 |
Participant questions & Exit survey |
Jessie Kissinger | |
| 12:00 pm | Life Sciences B116 | Workshop adjourns, box lunches available |
Please note: You will need to check out of the hotel the morning of the day you are leaving. You have two options for your luggage and going back to the airport.
Option 1) Check out and leave your bag at the Holiday Inn and take airport shuttle from the Holiday Inn
Option 2) Check out, bring your bag to the workshop and leave on the airport shuttle from the Georgia Center (3 blocks from workshop). Please coordinate with Betsy Wenthe for assistance transporting your luggage.
The same shuttle bus stops at both locations. Remember to make a reservation on the shuttle for the day and time you plan to leave. You will be leaving from the Holiday Inn MAIN, or the UGA Georgia Center.
Additional Exercises
Exercise 10: OrthoMCL and orthology
Regular Expressions
Additional ovies
chIP-chip lecture